Tailored microbiome and metagenomic analysis for research and industry

Let us handle YOUR BIOINFORMATIC analysis

  • Custom-Tailored Analysis: Every data analysis project is uniquely designed to meet client goals. We adapt our workflows to match study design, sample type, and desired outcomes.

  • Shotgun Metagenomics & Metatranscriptomics: We specialize in comprehensive profiling of microbial communities using whole-genome sequencing to assess both taxonomic composition and functional gene expression simultaneously.

  • Rich Biomarker Discovery: Identify microbial taxa and functional genes associated with specific treatments, conditions, or interventions. Utilizing the microbiome to enable unique biological insights.

  • Functional Pathway Analysis: Beyond “who’s present” in the microbiome, we also can explore “what they’re doing” using KEGG ortholog mapping, pathway enrichment (e.g., glycolysis, ABC transporters, quorum sensing), and visual tools like Pathview.

  • Diversity & Comparative Analytics: We assess alpha/beta diversity, generate ordination plots (PCoA, PLS-DA), and conduct robust statistical comparisons to highlight meaningful shifts in microbial structure and function between treatment groups.

  • Machine Learning for Prediction: We apply random forest and other supervised learning methods to model and predict outcomes (e.g., treatment status, clinical response) based on microbiome features.

  • Metadata Integration & Correlation: We perform correlation analyses between microbial features and continuous metadata (e.g., metabolite levels, clinical scores, diet, etc.) to uncover biologically meaningful relationships.

  • Metabolite Prediction (RUO): Predict potential metabolite shifts via inferred functional gene profiles.

  • Publication-Quality Reports: Clear, digestible, and professionally formatted reports ideal for translational science, internal R&D, and publication.

  • Validated, Peer-Reviewed Methods: Our analytical approaches have been featured in high-impact studies and are developed in collaboration with leading academic and industry partners.